Nothophytophthora gen. nov., a new sister genus of Phytophthora from natural and semi-natural ecosystems.
Identifieur interne : 000A84 ( Main/Exploration ); précédent : 000A83; suivant : 000A85Nothophytophthora gen. nov., a new sister genus of Phytophthora from natural and semi-natural ecosystems.
Auteurs : T. Jung [République tchèque, Portugal, Allemagne] ; B. Scanu [Italie] ; J. Bakonyi [Hongrie] ; D. Seress [Hongrie] ; G M Kovács [Hongrie] ; A. Durán [Canada] ; E Sanfuentes Von Stowasser [Chili] ; L. Schena [Italie] ; S. Mosca [Italie] ; P Q Thu [Viêt Nam] ; C M Nguyen [Viêt Nam] ; S. Fajardo [Chili] ; M. González [Chili] ; A. Pérez-Sierra [Royaume-Uni] ; H. Rees [Royaume-Uni] ; A. Cravador [Portugal] ; C. Maia [Portugal] ; M. Horta Jung [République tchèque, Portugal, Allemagne]Source :
- Persoonia [ 0031-5850 ] ; 2017.
Abstract
During various surveys of Phytophthora diversity in Europe, Chile and Vietnam slow growing oomycete isolates were obtained from rhizosphere soil samples and small streams in natural and planted forest stands. Phylogenetic analyses of sequences from the nuclear ITS, LSU, β-tubulin and HSP90 loci and the mitochondrial cox1 and NADH1 genes revealed they belong to six new species of a new genus, officially described here as Nothophytophthora gen. nov., which clustered as sister group to Phytophthora. Nothophytophthora species share numerous morphological characters with Phytophthora: persistent (all Nothophytophthora spp.) and caducous (N. caduca, N. chlamydospora, N. valdiviana, N. vietnamensis) sporangia with variable shapes, internal differentiation of zoospores and internal, nested and extended (N. caduca, N. chlamydospora) and external (all Nothophytophthora spp.) sporangial proliferation; smooth-walled oogonia with amphigynous (N. amphigynosa) and paragynous (N. amphigynosa, N. intricata, N. vietnamensis) attachment of the antheridia; chlamydospores (N. chlamydospora) and hyphal swellings. Main differing features of the new genus are the presence of a conspicuous, opaque plug inside the sporangiophore close to the base of most mature sporangia in all known Nothophytophthora species and intraspecific co-occurrence of caducity and non-papillate sporangia with internal nested and extended proliferation in several Nothophytophthora species. Comparisons of morphological structures of both genera allow hypotheses about the morphology and ecology of their common ancestor which are discussed. Production of caducous sporangia by N. caduca, N. chlamydospora and N. valdiviana from Valdivian rainforests and N. vietnamensis from a mountain forest in Vietnam suggests a partially aerial lifestyle as adaptation to these humid habitats. Presence of tree dieback in all forests from which Nothophytophthora spp. were recovered and partial sporangial caducity of several Nothophytophthora species indicate a pathogenic rather than a saprophytic lifestyle. Isolation tests from symptomatic plant tissues in these forests and pathogenicity tests are urgently required to clarify the lifestyle of the six Nothophytophthora species.
DOI: 10.3767/persoonia.2017.39.07
PubMed: 29503474
PubMed Central: PMC5832951
Affiliations:
- Allemagne, Canada, Chili, Hongrie, Italie, Portugal, Royaume-Uni, République tchèque, Viêt Nam
- Hongrie centrale
- Budapest
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Durán</name><affiliation wicri:level="1"><nlm:affiliation>Ontario Forest Research Institute, P6A 2E5 Sault Ste. Marie, ON, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Ontario Forest Research Institute, P6A 2E5 Sault Ste. Marie, ON</wicri:regionArea><wicri:noRegion>ON</wicri:noRegion></affiliation></author><author><name sortKey="Von Stowasser, E Sanfuentes" sort="Von Stowasser, E Sanfuentes" uniqKey="Von Stowasser E" first="E Sanfuentes" last="Von Stowasser">E Sanfuentes Von Stowasser</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción</wicri:regionArea><wicri:noRegion>Concepción</wicri:noRegion></affiliation></author><author><name sortKey="Schena, L" sort="Schena, L" uniqKey="Schena L" first="L" last="Schena">L. Schena</name><affiliation wicri:level="1"><nlm:affiliation>Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria</wicri:regionArea><wicri:noRegion>89122 Reggio Calabria</wicri:noRegion></affiliation></author><author><name sortKey="Mosca, S" sort="Mosca, S" uniqKey="Mosca S" first="S" last="Mosca">S. Mosca</name><affiliation wicri:level="1"><nlm:affiliation>Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria</wicri:regionArea><wicri:noRegion>89122 Reggio Calabria</wicri:noRegion></affiliation></author><author><name sortKey="Thu, P Q" sort="Thu, P Q" uniqKey="Thu P" first="P Q" last="Thu">P Q Thu</name><affiliation wicri:level="1"><nlm:affiliation>Forest Protection Research Centre, Vietnamese Academy of Forest Sciences, Duc Thang Ward, Northern Tu Liem District, Hanoi, Vietnam.</nlm:affiliation><country xml:lang="fr">Viêt Nam</country><wicri:regionArea>Forest Protection Research Centre, Vietnamese Academy of Forest Sciences, Duc Thang Ward, Northern Tu Liem District, Hanoi</wicri:regionArea><wicri:noRegion>Hanoi</wicri:noRegion></affiliation></author><author><name sortKey="Nguyen, C M" sort="Nguyen, C M" uniqKey="Nguyen C" first="C M" last="Nguyen">C M Nguyen</name><affiliation wicri:level="1"><nlm:affiliation>Forest Protection Research Centre, Vietnamese Academy of Forest Sciences, Duc Thang Ward, Northern Tu Liem District, Hanoi, Vietnam.</nlm:affiliation><country xml:lang="fr">Viêt Nam</country><wicri:regionArea>Forest Protection Research Centre, Vietnamese Academy of Forest Sciences, Duc Thang Ward, Northern Tu Liem District, Hanoi</wicri:regionArea><wicri:noRegion>Hanoi</wicri:noRegion></affiliation></author><author><name sortKey="Fajardo, S" sort="Fajardo, S" uniqKey="Fajardo S" first="S" last="Fajardo">S. Fajardo</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción</wicri:regionArea><wicri:noRegion>Concepción</wicri:noRegion></affiliation></author><author><name sortKey="Gonzalez, M" sort="Gonzalez, M" uniqKey="Gonzalez M" first="M" last="González">M. González</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción</wicri:regionArea><wicri:noRegion>Concepción</wicri:noRegion></affiliation></author><author><name sortKey="Perez Sierra, A" sort="Perez Sierra, A" uniqKey="Perez Sierra A" first="A" last="Pérez-Sierra">A. Pérez-Sierra</name><affiliation wicri:level="1"><nlm:affiliation>Forest Research, Alice Holt Lodge, Farnham, Surrey GU10 4LH, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Forest Research, Alice Holt Lodge, Farnham, Surrey GU10 4LH</wicri:regionArea><wicri:noRegion>Surrey GU10 4LH</wicri:noRegion></affiliation></author><author><name sortKey="Rees, H" sort="Rees, H" uniqKey="Rees H" first="H" last="Rees">H. Rees</name><affiliation wicri:level="1"><nlm:affiliation>Forest Research, Alice Holt Lodge, Farnham, Surrey GU10 4LH, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Forest Research, Alice Holt Lodge, Farnham, Surrey GU10 4LH</wicri:regionArea><wicri:noRegion>Surrey GU10 4LH</wicri:noRegion></affiliation></author><author><name sortKey="Cravador, A" sort="Cravador, A" uniqKey="Cravador A" first="A" last="Cravador">A. Cravador</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro, Portugal.</nlm:affiliation><country xml:lang="fr">Portugal</country><wicri:regionArea>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro</wicri:regionArea><wicri:noRegion>8005-130 Faro</wicri:noRegion></affiliation></author><author><name sortKey="Maia, C" sort="Maia, C" uniqKey="Maia C" first="C" last="Maia">C. Maia</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro, Portugal.</nlm:affiliation><country xml:lang="fr">Portugal</country><wicri:regionArea>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro</wicri:regionArea><wicri:noRegion>8005-130 Faro</wicri:noRegion></affiliation></author><author><name sortKey="Horta Jung, M" sort="Horta Jung, M" uniqKey="Horta Jung M" first="M" last="Horta Jung">M. Horta Jung</name><affiliation wicri:level="1"><nlm:affiliation>Phytophthora Research Centre, Mendel University, 613 00 Brno, Czech Republic.</nlm:affiliation><country xml:lang="fr">République tchèque</country><wicri:regionArea>Phytophthora Research Centre, Mendel University, 613 00 Brno</wicri:regionArea><wicri:noRegion>613 00 Brno</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro, Portugal.</nlm:affiliation><country xml:lang="fr">Portugal</country><wicri:regionArea>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro</wicri:regionArea><wicri:noRegion>8005-130 Faro</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Phytophthora Research and Consultancy, 83131 Nußdorf, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Phytophthora Research and Consultancy, 83131 Nußdorf</wicri:regionArea><wicri:noRegion>83131 Nußdorf</wicri:noRegion><wicri:noRegion>83131 Nußdorf</wicri:noRegion><wicri:noRegion>83131 Nußdorf</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:29503474</idno><idno type="pmid">29503474</idno><idno type="doi">10.3767/persoonia.2017.39.07</idno><idno type="pmc">PMC5832951</idno><idno type="wicri:Area/Main/Corpus">000815</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000815</idno><idno type="wicri:Area/Main/Curation">000815</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000815</idno><idno type="wicri:Area/Main/Exploration">000815</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en"><i>Nothophytophthora</i> gen. nov., a new sister genus of <i>Phytophthora</i> from natural and semi-natural ecosystems.</title><author><name sortKey="Jung, T" sort="Jung, T" uniqKey="Jung T" first="T" last="Jung">T. Jung</name><affiliation wicri:level="1"><nlm:affiliation>Phytophthora Research Centre, Mendel University, 613 00 Brno, Czech Republic.</nlm:affiliation><country xml:lang="fr">République tchèque</country><wicri:regionArea>Phytophthora Research Centre, Mendel University, 613 00 Brno</wicri:regionArea><wicri:noRegion>613 00 Brno</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro, Portugal.</nlm:affiliation><country xml:lang="fr">Portugal</country><wicri:regionArea>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro</wicri:regionArea><wicri:noRegion>8005-130 Faro</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Phytophthora Research and Consultancy, 83131 Nußdorf, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Phytophthora Research and Consultancy, 83131 Nußdorf</wicri:regionArea><wicri:noRegion>83131 Nußdorf</wicri:noRegion><wicri:noRegion>83131 Nußdorf</wicri:noRegion><wicri:noRegion>83131 Nußdorf</wicri:noRegion></affiliation></author><author><name sortKey="Scanu, B" sort="Scanu, B" uniqKey="Scanu B" first="B" last="Scanu">B. Scanu</name><affiliation wicri:level="1"><nlm:affiliation>Dipartimento di Agraria, Sezione di Patologia vegetale ed Entomologia, Università degli Studi di Sassari, 07100 Sassari, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Agraria, Sezione di Patologia vegetale ed Entomologia, Università degli Studi di Sassari, 07100 Sassari</wicri:regionArea><wicri:noRegion>07100 Sassari</wicri:noRegion></affiliation></author><author><name sortKey="Bakonyi, J" sort="Bakonyi, J" uniqKey="Bakonyi J" first="J" last="Bakonyi">J. Bakonyi</name><affiliation wicri:level="1"><nlm:affiliation>Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 1022 Budapest, Hungary.</nlm:affiliation><country xml:lang="fr">Hongrie</country><wicri:regionArea>Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 1022 Budapest</wicri:regionArea><placeName><settlement type="city">Budapest</settlement><region nuts="2">Hongrie centrale</region></placeName></affiliation></author><author><name sortKey="Seress, D" sort="Seress, D" uniqKey="Seress D" first="D" last="Seress">D. Seress</name><affiliation wicri:level="1"><nlm:affiliation>Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 1022 Budapest, Hungary.</nlm:affiliation><country xml:lang="fr">Hongrie</country><wicri:regionArea>Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 1022 Budapest</wicri:regionArea><placeName><settlement type="city">Budapest</settlement><region nuts="2">Hongrie centrale</region></placeName></affiliation></author><author><name sortKey="Kovacs, G M" sort="Kovacs, G M" uniqKey="Kovacs G" first="G M" last="Kovács">G M Kovács</name><affiliation wicri:level="1"><nlm:affiliation>Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 1022 Budapest, Hungary.</nlm:affiliation><country xml:lang="fr">Hongrie</country><wicri:regionArea>Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 1022 Budapest</wicri:regionArea><placeName><settlement type="city">Budapest</settlement><region nuts="2">Hongrie centrale</region></placeName></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, 1117 Budapest, Hungary.</nlm:affiliation><country xml:lang="fr">Hongrie</country><wicri:regionArea>Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, 1117 Budapest</wicri:regionArea><placeName><settlement type="city">Budapest</settlement><region nuts="2">Hongrie centrale</region></placeName></affiliation></author><author><name sortKey="Duran, A" sort="Duran, A" uniqKey="Duran A" first="A" last="Durán">A. Durán</name><affiliation wicri:level="1"><nlm:affiliation>Ontario Forest Research Institute, P6A 2E5 Sault Ste. Marie, ON, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Ontario Forest Research Institute, P6A 2E5 Sault Ste. Marie, ON</wicri:regionArea><wicri:noRegion>ON</wicri:noRegion></affiliation></author><author><name sortKey="Von Stowasser, E Sanfuentes" sort="Von Stowasser, E Sanfuentes" uniqKey="Von Stowasser E" first="E Sanfuentes" last="Von Stowasser">E Sanfuentes Von Stowasser</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción</wicri:regionArea><wicri:noRegion>Concepción</wicri:noRegion></affiliation></author><author><name sortKey="Schena, L" sort="Schena, L" uniqKey="Schena L" first="L" last="Schena">L. Schena</name><affiliation wicri:level="1"><nlm:affiliation>Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria</wicri:regionArea><wicri:noRegion>89122 Reggio Calabria</wicri:noRegion></affiliation></author><author><name sortKey="Mosca, S" sort="Mosca, S" uniqKey="Mosca S" first="S" last="Mosca">S. Mosca</name><affiliation wicri:level="1"><nlm:affiliation>Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria</wicri:regionArea><wicri:noRegion>89122 Reggio Calabria</wicri:noRegion></affiliation></author><author><name sortKey="Thu, P Q" sort="Thu, P Q" uniqKey="Thu P" first="P Q" last="Thu">P Q Thu</name><affiliation wicri:level="1"><nlm:affiliation>Forest Protection Research Centre, Vietnamese Academy of Forest Sciences, Duc Thang Ward, Northern Tu Liem District, Hanoi, Vietnam.</nlm:affiliation><country xml:lang="fr">Viêt Nam</country><wicri:regionArea>Forest Protection Research Centre, Vietnamese Academy of Forest Sciences, Duc Thang Ward, Northern Tu Liem District, Hanoi</wicri:regionArea><wicri:noRegion>Hanoi</wicri:noRegion></affiliation></author><author><name sortKey="Nguyen, C M" sort="Nguyen, C M" uniqKey="Nguyen C" first="C M" last="Nguyen">C M Nguyen</name><affiliation wicri:level="1"><nlm:affiliation>Forest Protection Research Centre, Vietnamese Academy of Forest Sciences, Duc Thang Ward, Northern Tu Liem District, Hanoi, Vietnam.</nlm:affiliation><country xml:lang="fr">Viêt Nam</country><wicri:regionArea>Forest Protection Research Centre, Vietnamese Academy of Forest Sciences, Duc Thang Ward, Northern Tu Liem District, Hanoi</wicri:regionArea><wicri:noRegion>Hanoi</wicri:noRegion></affiliation></author><author><name sortKey="Fajardo, S" sort="Fajardo, S" uniqKey="Fajardo S" first="S" last="Fajardo">S. Fajardo</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción</wicri:regionArea><wicri:noRegion>Concepción</wicri:noRegion></affiliation></author><author><name sortKey="Gonzalez, M" sort="Gonzalez, M" uniqKey="Gonzalez M" first="M" last="González">M. González</name><affiliation wicri:level="1"><nlm:affiliation>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción, Chile.</nlm:affiliation><country xml:lang="fr">Chili</country><wicri:regionArea>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción</wicri:regionArea><wicri:noRegion>Concepción</wicri:noRegion></affiliation></author><author><name sortKey="Perez Sierra, A" sort="Perez Sierra, A" uniqKey="Perez Sierra A" first="A" last="Pérez-Sierra">A. Pérez-Sierra</name><affiliation wicri:level="1"><nlm:affiliation>Forest Research, Alice Holt Lodge, Farnham, Surrey GU10 4LH, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Forest Research, Alice Holt Lodge, Farnham, Surrey GU10 4LH</wicri:regionArea><wicri:noRegion>Surrey GU10 4LH</wicri:noRegion></affiliation></author><author><name sortKey="Rees, H" sort="Rees, H" uniqKey="Rees H" first="H" last="Rees">H. Rees</name><affiliation wicri:level="1"><nlm:affiliation>Forest Research, Alice Holt Lodge, Farnham, Surrey GU10 4LH, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Forest Research, Alice Holt Lodge, Farnham, Surrey GU10 4LH</wicri:regionArea><wicri:noRegion>Surrey GU10 4LH</wicri:noRegion></affiliation></author><author><name sortKey="Cravador, A" sort="Cravador, A" uniqKey="Cravador A" first="A" last="Cravador">A. Cravador</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro, Portugal.</nlm:affiliation><country xml:lang="fr">Portugal</country><wicri:regionArea>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro</wicri:regionArea><wicri:noRegion>8005-130 Faro</wicri:noRegion></affiliation></author><author><name sortKey="Maia, C" sort="Maia, C" uniqKey="Maia C" first="C" last="Maia">C. Maia</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro, Portugal.</nlm:affiliation><country xml:lang="fr">Portugal</country><wicri:regionArea>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro</wicri:regionArea><wicri:noRegion>8005-130 Faro</wicri:noRegion></affiliation></author><author><name sortKey="Horta Jung, M" sort="Horta Jung, M" uniqKey="Horta Jung M" first="M" last="Horta Jung">M. Horta Jung</name><affiliation wicri:level="1"><nlm:affiliation>Phytophthora Research Centre, Mendel University, 613 00 Brno, Czech Republic.</nlm:affiliation><country xml:lang="fr">République tchèque</country><wicri:regionArea>Phytophthora Research Centre, Mendel University, 613 00 Brno</wicri:regionArea><wicri:noRegion>613 00 Brno</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro, Portugal.</nlm:affiliation><country xml:lang="fr">Portugal</country><wicri:regionArea>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro</wicri:regionArea><wicri:noRegion>8005-130 Faro</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Phytophthora Research and Consultancy, 83131 Nußdorf, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Phytophthora Research and Consultancy, 83131 Nußdorf</wicri:regionArea><wicri:noRegion>83131 Nußdorf</wicri:noRegion><wicri:noRegion>83131 Nußdorf</wicri:noRegion><wicri:noRegion>83131 Nußdorf</wicri:noRegion></affiliation></author></analytic><series><title level="j">Persoonia</title><idno type="ISSN">0031-5850</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">During various surveys of <i>Phytophthora</i> diversity in Europe, Chile and Vietnam slow growing oomycete isolates were obtained from rhizosphere soil samples and small streams in natural and planted forest stands. Phylogenetic analyses of sequences from the nuclear ITS, LSU, β-tubulin and <i>HSP90</i> loci and the mitochondrial <i>cox1</i> and <i>NADH1</i> genes revealed they belong to six new species of a new genus, officially described here as <i>Nothophytophthora</i> gen. nov., which clustered as sister group to <i>Phytophthora</i>. <i>Nothophytophthora</i> species share numerous morphological characters with <i>Phytophthora</i>: persistent (all <i>Nothophytophthora</i> spp.) and caducous (<i>N. caduca</i>, <i>N. chlamydospora</i>, <i>N. valdiviana</i>, <i>N. vietnamensis</i>) sporangia with variable shapes, internal differentiation of zoospores and internal, nested and extended (<i>N. caduca</i>, <i>N. chlamydospora</i>) and external (all <i>Nothophytophthora</i> spp.) sporangial proliferation; smooth-walled oogonia with amphigynous (<i>N. amphigynosa</i>) and paragynous (<i>N. amphigynosa</i>, <i>N. intricata</i>, <i>N. vietnamensis</i>) attachment of the antheridia; chlamydospores (<i>N. chlamydospora</i>) and hyphal swellings. Main differing features of the new genus are the presence of a conspicuous, opaque plug inside the sporangiophore close to the base of most mature sporangia in all known <i>Nothophytophthora</i> species and intraspecific co-occurrence of caducity and non-papillate sporangia with internal nested and extended proliferation in several <i>Nothophytophthora</i> species. Comparisons of morphological structures of both genera allow hypotheses about the morphology and ecology of their common ancestor which are discussed. Production of caducous sporangia by <i>N. caduca</i>, <i>N. chlamydospora</i> and <i>N. valdiviana</i> from Valdivian rainforests and <i>N. vietnamensis</i> from a mountain forest in Vietnam suggests a partially aerial lifestyle as adaptation to these humid habitats. Presence of tree dieback in all forests from which <i>Nothophytophthora</i> spp. were recovered and partial sporangial caducity of several <i>Nothophytophthora</i> species indicate a pathogenic rather than a saprophytic lifestyle. Isolation tests from symptomatic plant tissues in these forests and pathogenicity tests are urgently required to clarify the lifestyle of the six <i>Nothophytophthora</i> species.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">29503474</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0031-5850</ISSN><JournalIssue CitedMedium="Print"><Volume>39</Volume><PubDate><Year>2017</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Persoonia</Title><ISOAbbreviation>Persoonia</ISOAbbreviation></Journal><ArticleTitle><i>Nothophytophthora</i> gen. nov., a new sister genus of <i>Phytophthora</i> from natural and semi-natural ecosystems.</ArticleTitle><Pagination><MedlinePgn>143-174</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3767/persoonia.2017.39.07</ELocationID><Abstract><AbstractText>During various surveys of <i>Phytophthora</i> diversity in Europe, Chile and Vietnam slow growing oomycete isolates were obtained from rhizosphere soil samples and small streams in natural and planted forest stands. Phylogenetic analyses of sequences from the nuclear ITS, LSU, β-tubulin and <i>HSP90</i> loci and the mitochondrial <i>cox1</i> and <i>NADH1</i> genes revealed they belong to six new species of a new genus, officially described here as <i>Nothophytophthora</i> gen. nov., which clustered as sister group to <i>Phytophthora</i>. <i>Nothophytophthora</i> species share numerous morphological characters with <i>Phytophthora</i>: persistent (all <i>Nothophytophthora</i> spp.) and caducous (<i>N. caduca</i>, <i>N. chlamydospora</i>, <i>N. valdiviana</i>, <i>N. vietnamensis</i>) sporangia with variable shapes, internal differentiation of zoospores and internal, nested and extended (<i>N. caduca</i>, <i>N. chlamydospora</i>) and external (all <i>Nothophytophthora</i> spp.) sporangial proliferation; smooth-walled oogonia with amphigynous (<i>N. amphigynosa</i>) and paragynous (<i>N. amphigynosa</i>, <i>N. intricata</i>, <i>N. vietnamensis</i>) attachment of the antheridia; chlamydospores (<i>N. chlamydospora</i>) and hyphal swellings. Main differing features of the new genus are the presence of a conspicuous, opaque plug inside the sporangiophore close to the base of most mature sporangia in all known <i>Nothophytophthora</i> species and intraspecific co-occurrence of caducity and non-papillate sporangia with internal nested and extended proliferation in several <i>Nothophytophthora</i> species. Comparisons of morphological structures of both genera allow hypotheses about the morphology and ecology of their common ancestor which are discussed. Production of caducous sporangia by <i>N. caduca</i>, <i>N. chlamydospora</i> and <i>N. valdiviana</i> from Valdivian rainforests and <i>N. vietnamensis</i> from a mountain forest in Vietnam suggests a partially aerial lifestyle as adaptation to these humid habitats. Presence of tree dieback in all forests from which <i>Nothophytophthora</i> spp. were recovered and partial sporangial caducity of several <i>Nothophytophthora</i> species indicate a pathogenic rather than a saprophytic lifestyle. Isolation tests from symptomatic plant tissues in these forests and pathogenicity tests are urgently required to clarify the lifestyle of the six <i>Nothophytophthora</i> species.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jung</LastName><ForeName>T</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Phytophthora Research Centre, Mendel University, 613 00 Brno, Czech Republic.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro, Portugal.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Phytophthora Research and Consultancy, 83131 Nußdorf, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Scanu</LastName><ForeName>B</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Dipartimento di Agraria, Sezione di Patologia vegetale ed Entomologia, Università degli Studi di Sassari, 07100 Sassari, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bakonyi</LastName><ForeName>J</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 1022 Budapest, Hungary.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Seress</LastName><ForeName>D</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 1022 Budapest, Hungary.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kovács</LastName><ForeName>G M</ForeName><Initials>GM</Initials><AffiliationInfo><Affiliation>Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 1022 Budapest, Hungary.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, 1117 Budapest, Hungary.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Durán</LastName><ForeName>A</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Ontario Forest Research Institute, P6A 2E5 Sault Ste. Marie, ON, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>von Stowasser</LastName><ForeName>E Sanfuentes</ForeName><Initials>ES</Initials><AffiliationInfo><Affiliation>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción, Chile.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schena</LastName><ForeName>L</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mosca</LastName><ForeName>S</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Thu</LastName><ForeName>P Q</ForeName><Initials>PQ</Initials><AffiliationInfo><Affiliation>Forest Protection Research Centre, Vietnamese Academy of Forest Sciences, Duc Thang Ward, Northern Tu Liem District, Hanoi, Vietnam.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nguyen</LastName><ForeName>C M</ForeName><Initials>CM</Initials><AffiliationInfo><Affiliation>Forest Protection Research Centre, Vietnamese Academy of Forest Sciences, Duc Thang Ward, Northern Tu Liem District, Hanoi, Vietnam.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fajardo</LastName><ForeName>S</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción, Chile.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>González</LastName><ForeName>M</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Laboratorio de Patología Forestal, Facultad Ciencias Forestales y Centro de Biotecnología, Universidad de Concepción, Concepción, Chile.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pérez-Sierra</LastName><ForeName>A</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Forest Research, Alice Holt Lodge, Farnham, Surrey GU10 4LH, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rees</LastName><ForeName>H</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Forest Research, Alice Holt Lodge, Farnham, Surrey GU10 4LH, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cravador</LastName><ForeName>A</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro, Portugal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Maia</LastName><ForeName>C</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro, Portugal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Horta Jung</LastName><ForeName>M</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Phytophthora Research Centre, Mendel University, 613 00 Brno, Czech Republic.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratory of Molecular Biotechnology and Phytopathology, Center for Mediterranean Bioresources and Food, University of Algarve, 8005-130 Faro, Portugal.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Phytophthora Research and Consultancy, 83131 Nußdorf, Germany.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>08</Month><Day>07</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Persoonia</MedlineTA><NlmUniqueID>19540520R</NlmUniqueID><ISSNLinking>0031-5850</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Peronosporaceae</Keyword><Keyword MajorTopicYN="N">breeding system</Keyword><Keyword MajorTopicYN="N">caducity</Keyword><Keyword MajorTopicYN="N">evolution</Keyword><Keyword MajorTopicYN="N">oomycetes</Keyword><Keyword MajorTopicYN="N">phylogeny</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>04</Month><Day>26</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>06</Month><Day>29</Day></PubMedPubDate><PubMedPubDate 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Pérez-Sierra</name></noRegion><name sortKey="Rees, H" sort="Rees, H" uniqKey="Rees H" first="H" last="Rees">H. Rees</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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